rs30834601 SNP Detail

Summary

• ID
  rs30834601
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135110351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGT CCAGACAATG CTTGAGCTTC
  R
  CGTAGCCCAG AGCCTTCAGA GGACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45104501	mCV25393551	ABI	CRAMUS_MOUSE	f	SNP			G	A
ss49675341	NES12974025	PERLEGEN	MM_PANEL2	f	SNP	G	A		A		G	A	G		A
ss145526809	ENSMUSSNP2002442	ENSEMBL	ENSEMBL_Sanger	f	SNP				A
ss319988340	CHEV_1_137079190	CHEVERUD	SCREENING_POP	f	SNP					A				A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30834601					SNP	G	A	G	A	A	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49675341	NES12974025	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135110351 () rs orientation: forward

Symbol	Name	Function Class
Gm70872	predicted gene, 70872	1380 bp upstream
Gm70875	predicted gene, 70875	78 bp downstream
Rr419095	regulatory region 419095	125 bp distal
Rr419096	regulatory region 419096	890 bp proximal
Rr419097	regulatory region 419097	1459 bp proximal
Tssr13831	transcription start site region 13831	1719 bp upstream