rs30835674 SNP Detail

Summary

• ID
  rs30835674
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135109847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGACAGTGG AGACAGTTGA GCTACCGAGG
  CCTCAAAGCA ACTGCTGGGC GATCTTTTGG TACCCTGGAC TCCCGGCTCT TGCCTGCCTG
  CGCTGGCACA GTTGTAATCC AGGGTGCCTG GGCAGAGAGC CAGAGGGAAT TTTCCACCTG
  Y
  TTGCCTATGT TTTCTGTTCT GTGGTCTGGA GCCTGGGCCT GGGGAGGGGC AGGTCCCCCT
  AGGTATTTGG AGTAGAACTC CTGGGTTGTT TGGGGACCCT TTCCTTACTT CACAACCCAA
  CTGGGTCTCT TGTCTCCTCC CTAGAAGAGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45082562	mCV25393538	ABI	CRAMUS_MOUSE	f	SNP	C		C	T
ss49675344	NES12974066	PERLEGEN	MM_PANEL2	f	SNP		C		T		C	T	C		C
ss145526792	ENSMUSSNP5668067	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			T
ss319988335	CHEV_1_137078686	CHEVERUD	SCREENING_POP	f	SNP					T				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30835674					SNP	C	C	C	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49675344	NES12974066	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135109847 () rs orientation: forward

Symbol	Name	Function Class
Gm70872	predicted gene, 70872	1884 bp upstream
Gm70875	predicted gene, 70875	582 bp downstream
Rr419095	regulatory region 419095	within coordinates
Rr419096	regulatory region 419096	1394 bp proximal
Rr419097	regulatory region 419097	1963 bp proximal
Tssr13831	transcription start site region 13831	1215 bp upstream