rs30835675 SNP Detail

Summary

• ID
  rs30835675
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135109328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTC CCAGCCTGTA GTCACGTGTA
  Y
  ACCCAGCTAT TTACTTTTCT GCATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss49675345	NES12974065	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C		T	C	T
ss319988333	CHEV_1_137078167	CHEVERUD	SCREENING_POP	f	SNP					C				C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs30835675					SNP	C	T	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49675345	NES12974065	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135109328 () rs orientation: forward

Symbol	Name	Function Class
Gm70875	predicted gene, 70875	1101 bp downstream
Rr419094	regulatory region 419094	1659 bp distal
Rr419095	regulatory region 419095	within coordinates
Rr419096	regulatory region 419096	1913 bp proximal
Tssr13831	transcription start site region 13831	696 bp upstream