rs30835677 SNP Detail

Summary

• ID
  rs30835677
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135108248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAG AGTTCTCAAT GCCTTTCCAG
  K
  CCAGGGTTCC CAGAGCAACC TCTCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss45104720	mCV25393528	ABI	CRAMUS_MOUSE	f	SNP	G			T	G
ss49675347	NES12974063	PERLEGEN	MM_PANEL2	f	SNP		G	T		G		T	T
ss145526765	ENSMUSSNP4636349	ENSEMBL	ENSEMBL_Sanger	f	SNP	G				G
ss319988328	CHEV_1_137077087	CHEVERUD	SCREENING_POP	f	SNP						G			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs30835677					SNP	G	G	T	T	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49675347	NES12974063	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135108248 () rs orientation: forward

Symbol	Name	Function Class
Rr419094	regulatory region 419094	579 bp distal
Rr419095	regulatory region 419095	152 bp proximal
Tssr13831	transcription start site region 13831	376 bp downstream