rs30835679 SNP Detail

Summary

• ID
  rs30835679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135107159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGCCGCAG TCGGAGCTTA TTCCAACACC
  ACTGCCTGCT GTCCACCCAT CTGTGAGGAG AGAGCACTCC CCTGGCTTTG TCTGCCCCAT
  GGTCCTAATC ATACCATGTT AACACCCTGG TCTGTGTTAA GCAGTCAAGC CTATGACCCA
  Y
  TCTAGATCCT CTTGTCTAAC CTAGCACCAA AATCTTGTCG GTCTGCAGGA CTTAGCTGCA
  ACCTTGGATT TGGAGGTGAG ACGGCAGGAG GGGCCTTTTG CTAAAGCTAC CATACCTATC
  GCCATGAGAA CAAGCTGTGG GCCCTCCCTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss45040535	mCV25393512	ABI	CRAMUS_MOUSE	f	SNP	T	T		T	C
ss49675349	NES12974100	PERLEGEN	MM_PANEL2	f	SNP			T		C		T	T		T
ss145526722	ENSMUSSNP3934603	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T			C
ss319988314	CHEV_1_137075998	CHEVERUD	SCREENING_POP	f	SNP						C			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs30835679					SNP	T	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49675349	NES12974100	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135107159 () rs orientation: forward

Symbol	Name	Function Class
Rr419094	regulatory region 419094	within coordinates
Rr419095	regulatory region 419095	1241 bp proximal
Tssr13831	transcription start site region 13831	1465 bp downstream