rs30835771 SNP Detail

Summary

• ID
  rs30835771
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:44691267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGTCAGTCA TAGTTAGGTA AACATTCTTT
  GAACATTTGT TTCATAGCCC AGGGAAACGT TACTGAAGGG AGTAAATGTC ATGTAAAGAT
  GGTGAAGATG GAATTTTTGA AAAAATAAGT ATGTGTCCTA GTTCTGAAGA AGGCTTGAAG
  W
  CCTGGAGCTA TTCCTATAAA AAAATTTTCA AAATGTGTAA AAATTTCACA AAATCATCAC
  ACCCAGATGA TTTTACTAAT TTTTTGATCA CTTTACTTTT ATAGGTAGGT GTGTATACAT
  ATCTCATATA CATACGTGTT TCTACACTCA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss44968407	mCV23627157	ABI	CRAMUS_MOUSE	f	SNP		A				T		A
ss50949662	NES13945447	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	T	A		A	A	A		A	T	A
ss149031220	ENSMUSSNP2895750	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss319707556	CHEV_1_44708952	CHEVERUD	SCREENING_POP	f	SNP										A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs30835771					SNP	A	A	T	T	A	T	A	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50949662	NES13945447	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:44691267 () rs orientation: forward

Symbol	Name	Function Class
Gulp1	GULP, engulfment adaptor PTB domain containing 1	within coordinates
Tssr6574	transcription start site region 6574	345 bp upstream