rs30839211 SNP Detail

Summary

• ID
  rs30839211
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:119982386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTGCTAAACA GAGGGCAAGT AGGGGAACTC AGAACCAGTA AGTAACCCTG AGTGTTGGAG
  AGCCTGGAAC CTGAGTTCCC AGCAAGGGCC TGAAGGTATA AACTGCAGGA TGGAAGAGGT
  CAGAGGTCAG TGGTCAGCAG GCTGTTCCCT AAAGAGTGGC AGGAGGAAAT GGGTGAGACT
  TGTCAGGAGG CATTCACCTC AGTTTTTGAG GCAGAGTCTC TCACAGGATC TAGAGCTCAT
  ACGTTGGCAT AAATAAGCAA AGAAACAAAA ACCTTAAACA TACCGCACCC CCCACCAAGG
  R
  AAAAAAAAAA ACAAACAAAC CCAACAACAA CAACAGCAAC AACAGGAACA AACAGAAAGA
  AAATTCATTC CAAGTATGGC AAGGCAATTT TGGTACTTAG GAGACTGAGG CAGGAGAATT
  TAGAGTTGGA GGCTTGTCTG GGCTACATCG TGACATGCTG TATCAAAGAG GAGAGGGTGG
  GTTGGCACAT TGACGCCATG AGAAAAAGTG CTTGCTGTGC AAACTGACCA CTTGAGTTCT
  GTCACCAGAA CCCACAGTAG AAAGAGAAGC TATTACTGAA GTAAGCCTTT GACCCCCACA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44968239	mCV22772776	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30839211					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:119982386 () rs orientation: forward

Symbol	Name	Function Class
Gm41936	predicted gene, 41936	1919 bp upstream
Rr30107	regulatory region 30107	216 bp proximal
Rr371936	regulatory region 371936	within coordinates
Sctr	secretin receptor	within coordinates
Tssr8396	transcription start site region 8396	577 bp upstream
Tssr8397	transcription start site region 8397	593 bp upstream