rs30839946 SNP Detail

Summary

• ID
  rs30839946
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:46815153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCG TTGGCATCCT GTCCACTAAA
  R
  ACCACGGGGA AGCATCAGGA ACATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss39289574	mCV25349515	ABI	CRAMUS_MOUSE	f	SNP	G	G					G		A
ss49176201	NES12498574	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G		G	A	A	G		G	A	G		G
ss139387252	ENSMUSSNP3905525	ENSEMBL	ENSEMBL_Sanger	f	SNP	G								A
ss324590215	CHEV_14_47197371	CHEVERUD	SCREENING_POP	f	SNP												G				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30839946					SNP	G	G	G	G	G	G	G	G	A	A	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49176201	NES12498574	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:46815153 () rs orientation: forward

Symbol	Name	Function Class
Gm49319	predicted gene, 49319	within coordinates
Rr491233	regulatory region 491233	1860 bp distal
Rr491234	regulatory region 491234	1449 bp distal
Rr491235	regulatory region 491235	423 bp proximal
Rubie	RNA upstream of Bmp4 expressed in inner ear	1845 bp upstream
Tssr128285	transcription start site region 128285	1841 bp upstream