rs30839948 SNP Detail

Summary

• ID
  rs30839948
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:46814324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGTGAGC CACCCACGTG
  GGTGCAGGGA CCTGAACTCC AGTTCTCTGC AAGAGAAGTA TGTGCATTAA AGTGCAGAGC
  CATCTTTGCC GTCTGGGAAG GCCTCAGGTT TAAGAGAGGT TTCGTTCCTG GCTTCTGGTC
  AGCTTGTGCG CTCTCTGCCC TGCCTGTTTC ATCCATGCAA ACACCAGAGC TCTTTCCACA
  K
  TAGAAGCATT TCAGAACAAA CCACCGGGGC ATGAATTAAT CCAGAGAGAG ACTATAGCTG
  GTGGTCACAA ACAAGGAAGA GACTTAAAAT CAAGTGACTG GAGCCTTCAG GTCCTGGGAC
  GCAATACTGC AATGAGCTTT TAATTAGGTC AGCTTGGTGC TTGAGCCCAC TGTACTGTGT
  ATCTGTGCCT GAGGGAGGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49176203	NES12498612	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30839948					SNP	G	G	G	G	G	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49176203	NES12498612	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:46814324 () rs orientation: forward

Symbol	Name	Function Class
Gm49319	predicted gene, 49319	within coordinates
Rr491233	regulatory region 491233	1031 bp distal
Rr491234	regulatory region 491234	620 bp distal
Rr491235	regulatory region 491235	1252 bp proximal
Rubie	RNA upstream of Bmp4 expressed in inner ear	1016 bp upstream
Tssr128285	transcription start site region 128285	1012 bp upstream