rs30839952 SNP Detail

Summary

• ID
  rs30839952
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:46812579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTTCAAAG AACCAGACCA TCCTCTTATC TGGCTACAGG
  TTAGGCACAG AGTTTGGAAA TGTGTGTCAA CCATAGAATG CAGAGAACAG CTTAAGGAAG
  R
  AAAGTGTTTG AACATTTCAA TAAGACCAGT TTTCCTCTTT TCTTAGGAGC AGAAGCACCA
  AGGAAAGACG CATGCGCACG ACCCAAGGAA AGACGCATGC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss49176207	NES12498673	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs30839952					SNP	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49176207	NES12498673	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:46812579 () rs orientation: forward

Symbol	Name	Function Class
Gm49319	predicted gene, 49319	within coordinates
Rr491231	regulatory region 491231	1853 bp distal
Rr491232	regulatory region 491232	1160 bp distal
Rr491233	regulatory region 491233	289 bp proximal
Rr491234	regulatory region 491234	715 bp proximal
Rubie	RNA upstream of Bmp4 expressed in inner ear	within coordinates
Tssr128285	transcription start site region 128285	727 bp downstream