rs30839953 SNP Detail

Summary

• ID
  rs30839953
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:46812369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAGACAA GGAAGGAAAT
  GTCTCCCCGG GTTTCCACTT TTCCTTTCCT AGGAAGGCTT TCTAAATTCA TTGCCTCCAA
  TAGATGGACA AAAGGCTTCA CATCCATTTA TAAAATATCC AGAACTTTGG GAAGCGTCAT
  GCCATTTCGA TCCCACACTG AAATAAAGGC CCTCTCTAGA GTCCAGCACC TCGTTCATGT
  R
  GCTTTGCTGG AGCTCACCTG GACCTTTAGG TTTTTTTCTC TACCATAAAC TCTGCCTGAT
  GGTACAAGTC ATAGGTTATT CTATGCCTTT CCGTCCTAGT CAGTCTCCTT GGTTCAAAGA
  ACCAGACCAT CCTCTTATCT GGCTACAGGT TAGGCACAGA GTTTGGAAAT GTGTGTCAAC
  CATAGAATGC AGAGAACAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	WSB/EiJ
ss49176209	NES12498671	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	WSB/EiJ
rs30839953					SNP	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49176209	NES12498671	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:46812369 () rs orientation: forward

Symbol	Name	Function Class
Gm49319	predicted gene, 49319	within coordinates
Rr491231	regulatory region 491231	1643 bp distal
Rr491232	regulatory region 491232	950 bp distal
Rr491233	regulatory region 491233	499 bp proximal
Rr491234	regulatory region 491234	925 bp proximal
Rubie	RNA upstream of Bmp4 expressed in inner ear	within coordinates
Tssr128285	transcription start site region 128285	937 bp downstream