rs30841823 SNP Detail

Summary

• ID
  rs30841823
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151854151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTCATTC CTCTGACCTT
  CATATGTGTA CACACACATA CACACACATG TACTCATGCA CACATACATG CATACATGCA
  TAGACACATG CGCACACACA CAAACACATG TACAAACACA CACACACACA CGCCACAACC
  CAATAGTTAA GACATTTACA AAGTATAAAT GTGACATCTG AAGAAAAAGC AAGCTGGACG
  Y
  GGTGGTCCAC ACCATAAACC CAATGTTTAG GAGACTTACA CTGAATTACC ACACACTCAA
  CCTAGCCTGG GCCACATGCT AAGTCCCAGG GTAGGACCCT GTCCTAAAAA ACAAAACAAG
  TGGGAAAGGA ATGAGAGAAT ATATAAACAT TCCGTGGGAT TTTATTCTGT TTTCATTAGT
  TAAATCCATT ATTTTACCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45470994	mCV24210674	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss321028238	CHEV_3_151811478	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30841823					SNP	T	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151854151 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Rr587467	regulatory region 587467			502 bp distal
Rr587468	regulatory region 587468			875 bp proximal
Tssr1099	transcription start site region 1099			1128 bp downstream