rs30842185 SNP Detail

Summary

• ID
  rs30842185
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151856468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATCCGCC TGCCTCTGCC
  TCCCAAGTGC TGGGATTAAA GGTGTGTGCC ACCACGCCCA GCTCGCCAGG TTTGGGTTTG
  GTGGTCATGT AATCCCCCAA ATTTAGGAAG GTAAGACAGG GGAAATCGAA ACTCCAAAGC
  TGACATAAGG GGTAAAGGTG CCTGTCACCA AACACCTCAA GTTAGGCTCC TGGATCCACC
  Y
  GGAGGAAGGA GAGAGCCAAC TCCCACGCGC CCGCGCCATA GCTGTGCACT CCACGTACAA
  ATAAATAAAG GGAATGCAAG ACATTTGAGA AGTTGAAGAT CTTTCTTGTT TACAGACGGG
  GTTTGGTACC ATACAGGACA CTGCCTCAAT TTTAAAAGGG GTTAAGGGGT ATACTGAAGT
  GATAAAATTA TAAATATCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45472186	mCV24210665	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss136101117	ENSMUSSNP5868293	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss321028244	CHEV_3_151813795	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30842185					SNP	C	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151856468 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Gm64753	predicted gene, 64753			1459 bp upstream
Rr587468	regulatory region 587468			403 bp distal
Rr587469	regulatory region 587469			969 bp proximal
Rr587470	regulatory region 587470			1495 bp proximal