rs30842765 SNP Detail

Summary

• ID
  rs30842765
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137041888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTACTTC TTAGAAAAAC
  ATTACCTTTT CTATTAGTAT GATATACATA ATCATTAGGA AATACTGCTA TGGCTTAGTT
  TTGTATGGGT AGATTCAATT TGTGGCAGAG TTTTACCAGG GTTATAAACA CAGGTAAGGG
  TTCAGGAATG GTTGCTGAAC CTTTCGAAAC AGGAGATTGG ATTGACTCAC GGCGAAGAAC
  R
  TTCCAGTCAT TCCATCTGTT GACAGATGGC TCTGTGCTTG CATCAGAGGA TTTGTATCCT
  TGCACTGAAA TAAATATAGA TCTCATGCCT GAACTATTGC TTTCATAACA CCCCACATTC
  ATGCCTCTCT GCACCAATAG AGTCATGTAA ACTTAGGGAA TCAGTGTGAG CCTAAAAGAC
  CATCTCAATG TGTTAAGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46990325	NES10869500	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30842765					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46990325	NES10869500	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137041888 () rs orientation: forward

Symbol	Name	Function Class
Tssr35852	transcription start site region 35852	within coordinates