rs30842769 SNP Detail

Summary

• ID
  rs30842769
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137042159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTAAAAGAC CATCTCAATG TGTTAAGTAA GCAGGGATGG
  ATAGTTAGAT AAGGTGACAG AGAATGGCTT TGGAAACTTG TCACAATTCC CGATTCTCAC
  Y
  TGAGTAATAC CGAACCAGCA CCAGATAGGC CACCTTAATT CAACTCACAG AACGTAAATG
  AAGGAGATAC TCCTGTTGGC GGCATCAGTT TGGCCCAAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45562931	mCV23606895	ABI	CRAMUS_MOUSE	f	SNP		C					C		T
ss46990329	NES10869502	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T	T	C	T		C	T	T		C
ss135939604	ENSMUSSNP4031444	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
ss320975341	CHEV_3_136999362	CHEVERUD	SCREENING_POP	f	SNP												C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30842769					SNP	C	C	C	C	C	C	C	T	T	C	T	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46990329	NES10869502	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137042159 () rs orientation: forward

Symbol	Name	Function Class
Tssr35852	transcription start site region 35852	268 bp upstream