rs30843659 SNP Detail

Summary

• ID
  rs30843659
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137042644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTAAGTCAG CTTTATCACT CTGAAATAAT GTCTCCTCTA
  GGATCCTAAC AACATGAAGT CAATCCAATC TCCTGTTTCG AAAGGTTCAG CAACCATTCC
  Y
  GAATCCTTAC CTGTGTTTAT AACCCTGGTA AAACTCTGCC ACAAATTGAA TCTTCCCACA
  CAAACCTGAG CCATAGCAGT ATTTCCTAAT GGTTATGTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46990339	NES10869512	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	C	T		T	C		C
ss320975348	CHEV_3_136999847	CHEVERUD	SCREENING_POP	f	SNP									T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30843659					SNP	T	T	T	T	T	C	C	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46990339	NES10869512	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137042644 () rs orientation: forward

Symbol	Name	Function Class
Tssr35852	transcription start site region 35852	753 bp upstream