rs30844318 SNP Detail

Summary

• ID
  rs30844318
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:104898953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTGCGGA ACCTGACACA
  CGTCTATCCA TTGACTGCAT TTGGCCACAG GTGTTTCCTG AGGCAAAGAG AGCTTGATGT
  GAGGCGACAT GGTGCTCCCA TCTTTCTCAC CCTCTGCGTC GGCCTTTGGT TCCCTGTGAA
  TCTCCTGACA TCTCCTTGCA AAACAAGACT TTCCTTTAGC CTCTCCCTTT TTCGCAGGCG
  Y
  GTGCTGACAT CTTCTGCCCC ACCCAAACCT TTCCTATGCT GCTGTCCAGG TTCAAGAGGC
  TCACTGACTA AAGGGGACAC TCTACCTTTT TTTTTTTTTT GCCTTTGGCT GGCACTTGCC
  ACCCCAGACT TGAGACCTCC TACATTGCGT TCATACTCTG TACAAAGGAA TTTACACACT
  TCGATCTACT CTGGATTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47490344	NES11213215	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30844318					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47490344	NES11213215	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:104898953 () rs orientation: forward

Symbol	Name	Function Class
Bean1	brain expressed, associated with Nedd4, 1	within coordinates
Cpgi20895	CpG island 20895	549 bp distal
Rr668636	regulatory region 668636	1417 bp distal
Rr668637	regulatory region 668637	1689 bp distal
Rr668638	regulatory region 668638	551 bp distal
Tssr79035	transcription start site region 79035	1709 bp downstream