rs30844323 SNP Detail

Summary

• ID
  rs30844323
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:104899171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACCCAAA CCTTTCCTAT
  GCTGCTGTCC AGGTTCAAGA GGCTCACTGA CTAAAGGGGA CACTCTACCT TTTTTTTTTT
  TTTGCCTTTG GCTGGCACTT GCCACCCCAG ACTTGAGACC TCCTACATTG CGTTCATACT
  CTGTACAAAG GAATTTACAC ACTTCGATCT ACTCTGGATT AGGTGAAGAG AGGATTGCTC
  R
  CTGTGGGTTG ACTTGGGTGA GCCACAGGTG ATGGTTGGTT GCAACAGGTA TCAGGATGCT
  CAGCCGATGG GACAGTGAGG TTACCAGGAG CCGCAGAGGT GCCCACTGAG ATTCCTTGCT
  GACTATCCAG GCCATTACTT TAGGTCACAG GACCCCATGA TGAACCTAGT GAAGGAACCG
  GAGCTGGTGG CAGACAGCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47490350	NES11213219	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30844323					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47490350	NES11213219	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:104899171 () rs orientation: forward

Symbol	Name	Function Class
Bean1	brain expressed, associated with Nedd4, 1	within coordinates
Cpgi20895	CpG island 20895	767 bp distal
Rr668636	regulatory region 668636	1635 bp distal
Rr668637	regulatory region 668637	1907 bp distal
Rr668638	regulatory region 668638	769 bp distal
Tssr79035	transcription start site region 79035	1927 bp downstream