rs30844325 SNP Detail

Summary

• ID
  rs30844325
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137042719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCGAAAGG TTCAGCAACC ATTCCTGAAT CCTTACCTGT
  GTTTATAACC CTGGTAAAAC TCTGCCACAA ATTGAATCTT CCCACACAAA CCTGAGCCAT
  W
  GCAGTATTTC CTAATGGTTA TGTATGCTAC CTTAGCCTAA CAAGTCTAGA AACCAAGGTC
  AGGTTTCTTT TCTTGTTCTA ATTATTTCTG TAGGCACTG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46990345	NES10869519	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A		A	A		A
ss320975350	CHEV_3_136999922	CHEVERUD	SCREENING_POP	f	SNP									A			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30844325					SNP	A	A	A	A	A	A	T	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46990345	NES10869519	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137042719 () rs orientation: forward

Symbol	Name	Function Class
Tssr35852	transcription start site region 35852	828 bp upstream