rs30844327 SNP Detail

Summary

• ID
  rs30844327
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137042746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATCCTTACC TGTGTTTATA ACCCTGGTAA AACTCTGCCA
  CAAATTGAAT CTTCCCACAC AAACCTGAGC CATAGCAGTA TTTCCTAATG GTTATGTATG
  Y
  TACCTTAGCC TAACAAGTCT AGAAACCAAG GTCAGGTTTC TTTTCTTGTT CTAATTATTT
  CTGTAGGCAC TGTGAAATGA CCCCCCAGAA TCTCACTTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J
ss46990347	NES10869522	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	T	C		C
ss135939610	ENSMUSSNP1104283	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					T
ss320975351	CHEV_3_136999949	CHEVERUD	SCREENING_POP	f	SNP									C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J
rs30844327					SNP	C	C	C	C	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46990347	NES10869522	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137042746 () rs orientation: forward

Symbol	Name	Function Class
Tssr35852	transcription start site region 35852	855 bp upstream