rs30844328 SNP Detail

Summary

• ID
  rs30844328
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137042966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGAGGCACA AATTCATCCT CATTTCCCCA GGGCGAATCT
  AGGCCCTTAG AGGACAAGTA TGTCAGCCCG TGAGGACAGC ACTTAAGGAG GGCAAGGATT
  Y
  GAAATCCGCC AGTTTGTGAG ATCGTCACTT TGCTTTGCAG CCACTTTAGA AGATTATCTT
  ATGCAGCATG AAGAGATGGC AGAGAGGATA GAGAAATTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J
ss46990349	NES10869524	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	T		T
ss135939622	ENSMUSSNP1899134	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T			C
ss320975355	CHEV_3_137000169	CHEVERUD	SCREENING_POP	f	SNP								T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J
rs30844328					SNP	T	T	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46990349	NES10869524	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137042966 () rs orientation: forward

Symbol	Name	Function Class
Tssr35852	transcription start site region 35852	1075 bp upstream