rs30845141 SNP Detail

Summary

• ID
  rs30845141
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137045088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGGTTGGGA TGTGAAATCT GTGACTGCGG AATTCAGGAA
  TCTTCTGACT CCATTCTTCA CACAAGCACT GTGTTCAGGG GTCGGGCTGT GCAACCATCC
  K
  GTATAAAGCA GTCATCACTA AGAGCAAAGA GGCTACTGGT TGGTGTTTGG TCCTACAGAA
  CACACAGTTC GGAACATCAC CAATGCCCTA TGACAGCTG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J
ss46990363	NES10869399	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	G	T		T
ss135939679	ENSMUSSNP4120466	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					G
ss320975382	CHEV_3_137002291	CHEVERUD	SCREENING_POP	f	SNP										T		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J
rs30845141					SNP	T	T	T	T	T	T	T	G	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46990363	NES10869399	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137045088 () rs orientation: forward

Symbol	Name	Function Class
Emcn	endomucin	1736 bp upstream
Rr585936	regulatory region 585936	1460 bp proximal
Tssr31897	transcription start site region 31897	1705 bp upstream
Tssr31898	transcription start site region 31898	1749 bp upstream
Tssr31899	transcription start site region 31899	1776 bp upstream
Tssr31900	transcription start site region 31900	1820 bp upstream
Tssr31901	transcription start site region 31901	1852 bp upstream
Tssr31902	transcription start site region 31902	1885 bp upstream