rs30845222 SNP Detail

Summary

• ID
  rs30845222
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55291676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTACCAGTC ACTGCGTTGC
  TGTGTGTCTG CCACCGCTGC CTGGCACTCA TGGGGCCGTG TGTGTATGTG TGTGTGTGCG
  CGCGCATGTA CATGTACGCA TACGCATGTG TTGTATGTGA GCCTCCTGGG CATGGGTGGG
  GGTTGGCATT GTGGTTGCCA CTGTAGCATC CAACTAGAAG GACAGAAGGA TGGAGTGGAA
  K
  AAAGAGGGAG AAGCGCGGGG CCTCGGAGGG GAGAAGAGGG TGCACGAGTT GCTTCATGCT
  GTATGGTTGC AGGCATTGGC ACTGCAGCTG CCACCCTTGT GCCCATGGAG ATGGGAGGGG
  ACAAGTGGAG GGGGCAGCGA CAGGAGTCCT TGTGCTCTGG GGGGAAGATG CGGCACACAA
  GAGCTGTTGG CATCACAACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39226599	mCV25266545	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30845222					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55291676 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6483	CpG island 6483	within coordinates
Rr492408	regulatory region 492408	1319 bp distal
Rr492409	regulatory region 492409	1211 bp distal
Rr492410	regulatory region 492410	within coordinates
Rr492411	regulatory region 492411	784 bp proximal
Rr492412	regulatory region 492412	1167 bp proximal
Rr492413	regulatory region 492413	1285 bp proximal
Tssr125745	transcription start site region 125745	294 bp downstream
Tssr125746	transcription start site region 125746	651 bp upstream
Tssr125747	transcription start site region 125747	1441 bp upstream
Tssr125748	transcription start site region 125748	1630 bp upstream