rs30845315 SNP Detail

Summary

• ID
  rs30845315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:104899235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGATCTACTC TGGATTAGGT GAAGAGAGGA TTGCTCGCTG
  TGGGTTGACT TGGGTGAGCC ACAGGTGATG GTTGGTTGCA ACAGGTATCA GGATGCTCAG
  Y
  CGATGGGACA GTGAGGTTAC CAGGAGCCGC AGAGGTGCCC ACTGAGATTC CTTGCTGACT
  ATCCAGGCCA TTACTTTAGG TCACAGGACC CCATGATGAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47490353	NES11213221	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30845315					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47490353	NES11213221	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:104899235 () rs orientation: forward

Symbol	Name	Function Class
Bean1	brain expressed, associated with Nedd4, 1	within coordinates
Cpgi20895	CpG island 20895	831 bp distal
Rr668636	regulatory region 668636	1699 bp distal
Rr668637	regulatory region 668637	1971 bp distal
Rr668638	regulatory region 668638	833 bp distal
Tssr79035	transcription start site region 79035	1991 bp downstream