rs30845765 SNP Detail

Summary

• ID
  rs30845765
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6095889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGCCTTAA AGTCGTCTAG AATCAGTTTT CTTTCTTTTT
  TGACAGACAA GATGTTTAAT TCCGTTGTAC TGAAGGAAAG CCATTTTATG TATTTTTCTT
  R
  AGTGCTCTAT CAGTAATGAC AATTCTGAAA GCCCCTGTGT TATATTTTAA CAACACAGTC
  ACCTCCGGTT CTGTATTCAC TGTCCGTGTT GTGACTCCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44968942	mCV24718635	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					A		G
ss50575708	NES13653295	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		G	G	A	G		G	G	G	G		G
ss146014861	ENSMUSSNP5716205	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
ss325717977	CHEV_19_6045859	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30845765					SNP	A	A	G	G	G	A	G	A	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50575708	NES13653295	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6095889 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10491	CpG island 10491	355 bp proximal
D530017H19Rik	RIKEN cDNA D530017H19 gene	within coordinates
Gm8034	predicted gene 8034	1037 bp upstream
Gm59262	predicted gene, 59262	243 bp upstream
Rr370438	regulatory region 370438	449 bp upstream
Rr405816	regulatory region 405816	1378 bp downstream
Rr405817	regulatory region 405817	within coordinates
Rr543275	regulatory region 543275	1419 bp distal
Rr543276	regulatory region 543276	1555 bp distal
Rr543277	regulatory region 543277	within coordinates
Rr543278	regulatory region 543278	200 bp proximal
Rr543279	regulatory region 543279	814 bp proximal
Rr543280	regulatory region 543280	1153 bp proximal
Rr543281	regulatory region 543281	1256 bp proximal
Rr543282	regulatory region 543282	1449 bp proximal
Rr543283	regulatory region 543283	1512 bp proximal
Rr543284	regulatory region 543284	1560 bp proximal
Syvn1	synovial apoptosis inhibitor 1, synoviolin	717 bp upstream
Tssr154538	transcription start site region 154538	245 bp upstream
Tssr154539	transcription start site region 154539	770 bp upstream
Tssr154540	transcription start site region 154540	1162 bp upstream
Tssr154541	transcription start site region 154541	1196 bp upstream
Tssr154542	transcription start site region 154542	1222 bp upstream
Tssr157816	transcription start site region 157816	958 bp upstream
Tssr157817	transcription start site region 157817	1089 bp downstream
Tssr157818	transcription start site region 157818	1551 bp downstream