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rs30846095 SNP Detail
Summary
  • ID
    rs30846095
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:137045349 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          ATGCCTCATA AAAATCTAAT AAAAACCAGG AATATCGGGT
    GGGGATATAA CTTGGTGGTG GTACACTTTT CTGACATGAA TTCAGTCTGC AGCAACAAAA
    R
    GGAAGGGTGG CCTCAGAACC AGAAGTGAGC AGGAGCTTGT CTTAAATCTG TGTTTACTTC
    TGTTAGAAAT GTCTTACTCT GTAGACCAGG CTGGCCTCG                       
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
LG/J
MSM/Ms
NOD/ShiLtJ
NZW/LacJ
SM/J
ss46990367 NES10869403 PERLEGEN MM_PANEL2 f SNP G G G G G G A G G A
ss135939691 ENSMUSSNP3293645 ENSEMBL ENSEMBL_Sanger f SNP G G A G
ss320975386 CHEV_3_137002552 CHEVERUD SCREENING_POP f SNP G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
LG/J
MSM/Ms
NOD/ShiLtJ
NZW/LacJ
SM/J
rs30846095 SNP G G G G G G G A G G G G A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46990367 NES10869403 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:137045349 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Emcn endomucin 1475 bp upstream
Rr585936 regulatory region 585936 1199 bp proximal
Tssr31897 transcription start site region 31897 1444 bp upstream
Tssr31898 transcription start site region 31898 1488 bp upstream
Tssr31899 transcription start site region 31899 1515 bp upstream
Tssr31900 transcription start site region 31900 1559 bp upstream
Tssr31901 transcription start site region 31901 1591 bp upstream
Tssr31902 transcription start site region 31902 1624 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory