rs30846098 SNP Detail

Summary

• ID
  rs30846098
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137047077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACTGAGAC CATCGGTAGG CACCATGCGG CTGCTTCAAG
  CGACTGTTCT TTTCTTCCTT TTGTCCAACA GTCTCTGCCA CAGTGAGGAC GGCAAAGGTA
  Y
  GGTCCTCTTA TCTTTTCTGA TGGTGTGGGT GAGCTGCTAG GCTCAGTTGA TCCTCGGGGG
  CTTCTCTGAT GAGTTGCTGC TTGATTGGCT GAACAGGGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J
ss45560877	mCV23606869	ABI	CRAMUS_MOUSE	f	SNP		C	C				C	T
ss46990371	NES10869276	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C		T	C		C
ss320975393	CHEV_3_137004280	CHEVERUD	SCREENING_POP	f	SNP										C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J
rs30846098					SNP	C	C	C	C	C	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46990371	NES10869276	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137047077 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Emcn	endomucin			Intron
				Splice-Site
Rr585936	regulatory region 585936			163 bp distal
Tssr31897	transcription start site region 31897			270 bp downstream
Tssr31898	transcription start site region 31898			221 bp downstream
Tssr31899	transcription start site region 31899			170 bp downstream
Tssr31900	transcription start site region 31900			162 bp downstream
Tssr31901	transcription start site region 31901			126 bp downstream
Tssr31902	transcription start site region 31902			93 bp downstream