rs30846101 SNP Detail

Summary

• ID
  rs30846101
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137048126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGCGTGCAC TGTGAGAGGG TATGTGTTTG TGTGTGTGTG
  TGTGTGTGGG GGGGGGGGGA AGTAATCCAG AAAACTCAGT TCTAATTTTA TTTGCCTGTC
  Y
  CTTTTTCCAA AATTTACTGC CTAAAAGATT TTAATTTATA AAAACAATCA AACGTAGAAA
  ATAATAAAAA TCACTGGTCC AACTTGAGTT TACATTTTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J
ss45479189	mCV23606860	ABI	CRAMUS_MOUSE	f	SNP						T	C
ss46990375	NES10869283	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T		C	T		T
ss320975396	CHEV_3_137005329	CHEVERUD	SCREENING_POP	f	SNP									T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J
rs30846101					SNP	T	T	T	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46990375	NES10869283	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137048126 () rs orientation: forward

Symbol	Name	Function Class
Emcn	endomucin	Intron
Rr585936	regulatory region 585936	1212 bp distal
Tssr31897	transcription start site region 31897	1319 bp downstream
Tssr31898	transcription start site region 31898	1270 bp downstream
Tssr31899	transcription start site region 31899	1219 bp downstream
Tssr31900	transcription start site region 31900	1211 bp downstream
Tssr31901	transcription start site region 31901	1175 bp downstream
Tssr31902	transcription start site region 31902	1142 bp downstream