rs30847198 SNP Detail

Summary

• ID
  rs30847198
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180213826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAGGAGA AAGCCCATCT
  GCCCACCTCC CAAATCTACA CCATGCAAAG ATATGTAAAC TTTTTTTGTT TTGTTTTTTG
  TTTTTTATTT TTCCAGACAG GATATCTTCG CTGTCCTGGA ACTACCTTTG TAGAGCAGGC
  TGGCCTGGAA TCCAGAGCTC CACCTGCCTC TGCTTCCCCA GTGCTGGGAT TAAAAGTGTG
  Y
  GCCACCAGTG CCCAGCTGTA AATTGATCTT TCTTTTAGAG CTTATATTTA ATATTGGGAT
  CAAACATTTT ACCTTGATGA AGGTGTTTTT CTATATGCTA TAAGCAGTTG CATTCTGTCA
  GCTAGCCTGA GCTAGATTTG GCCTGTAGTT GTATCCGTTT CTTAAGACTT CCCAACTCTG
  GCCTAGCTCA GGGAATAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss44969715	mCV24582566	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss146380354	ENSMUSSNP5377705	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs30847198					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180213826 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1108	CpG island 1108	1206 bp proximal
Itpkb	inositol 1,4,5-trisphosphate 3-kinase B	Intron
Rr396657	regulatory region 396657	1152 bp upstream
Rr424483	regulatory region 424483	1304 bp distal
Rr424484	regulatory region 424484	1058 bp distal
Rr424485	regulatory region 424485	625 bp distal
Rr424486	regulatory region 424486	600 bp proximal
Tssr10464	transcription start site region 10464	1481 bp upstream
Tssr10465	transcription start site region 10465	1738 bp upstream
Tssr15537	transcription start site region 15537	1215 bp downstream