rs30847235 SNP Detail

Summary

• ID
  rs30847235
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:32735002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGGC AGGATACGCG CTTGGGCGTC
  K
  GGACGCGGCT GCGCTCAGCT CTCTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss44969513	mCV23043377	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30847235					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:32735002 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10762	CpG island 10762	within coordinates
Gm36566	predicted gene, 36566	190 bp upstream
Gm56634	predicted gene, 56634	1125 bp upstream
Gm56643	predicted gene, 56643	189 bp upstream
Gm58496	predicted gene, 58496	within coordinates
Gm58497	predicted gene, 58497	102 bp upstream
Pten	phosphatase and tensin homolog	within coordinates
Rr370486	regulatory region 370486	920 bp downstream
Rr405924	regulatory region 405924	1802 bp downstream
Tssr5485	transcription start site region 5485	102 bp downstream
Tssr5486	transcription start site region 5486	78 bp upstream
Tssr5487	transcription start site region 5487	124 bp upstream
Tssr155992	transcription start site region 155992	15 bp downstream
Tssr155993	transcription start site region 155993	2 bp upstream
Tssr155994	transcription start site region 155994	45 bp upstream
Tssr155995	transcription start site region 155995	723 bp upstream
Tssr158898	transcription start site region 158898	1176 bp upstream
Tssr158899	transcription start site region 158899	264 bp upstream
Tssr158900	transcription start site region 158900	219 bp upstream