rs30847287 SNP Detail

Summary

• ID
  rs30847287
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17848408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAA GGGGTGGAGA TTGGAGAATG
  M
  GGTTCTGGCG TGTGGTCTGA GGGAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45471656	mCV22663592	ABI	CRAMUS_MOUSE	f	SNP		A	C					C		C
ss46817766	NES10864827	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	A	A	C		C	C	A	C	C	C	C	C	C
ss134653800	ENSMUSSNP1650539	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30847287					SNP	A	A	C	C	A	A	C	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817766	NES10864827	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17848408 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12996	CpG island 12996	within coordinates
Gm66000	predicted gene, 66000	26 bp upstream
Mir124-2hg	Mir124-2 host gene (non-protein coding)	within coordinates
Mir124a-2	microRNA 124a-2	1418 bp upstream
Mir124b	microRNA 124b	1441 bp downstream
Rr573849	regulatory region 573849	1950 bp distal
Rr573850	regulatory region 573850	1135 bp distal
Rr573851	regulatory region 573851	314 bp distal
Tssr28485	transcription start site region 28485	318 bp downstream
Tssr28486	transcription start site region 28486	252 bp downstream
Tssr28487	transcription start site region 28487	202 bp downstream
Tssr28488	transcription start site region 28488	52 bp upstream
Tssr28489	transcription start site region 28489	1499 bp upstream