rs30848212 SNP Detail

Summary

• ID
  rs30848212
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107343382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGTCTGA GGACAACTTG
  TCGGGGTCAG TTCTCTCCTT GTGAGTCCTT GGGATCAGAT GAAGGTTGTC AGGCCCGGCA
  ACTAGGGTCT TTACCCACTT GGCTATCTGG CCAGCTCAGT AAGCAATGCT CATGCTTCCT
  TGGTACCACC TTATGTCATT CTCCTGGAGC TCTGTATACC TACTCTTACT CCTGTTAGAC
  Y
  AAGAAGAATG GAGGTTCTGG CAGCCTAAGC AAGCCAGGAC GACTGGGAAG TAACAGATCT
  GGGACTCAGA TCTCACCCCA GCACTGTGGT TCCATTCTCT GAGGCAGCCC CCAGGTTAAG
  ACTCAGCTCT AGTCCCAGGG ACAGCGGAAG CCTGGAGTGT GTCTTCCTAC ATGATGCAGC
  TTCTGAGGCG GAAGGGCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
ss45471961	mCV22906693	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T
ss46855551	NES10710949	PERLEGEN	MM_PANEL2	f	SNP			T	T	T	T	T		C	T	T	T	T	C
ss135584011	ENSMUSSNP2369981	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
rs30848212					SNP	C	C	T	T	T	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46855551	NES10710949	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107343382 () rs orientation: forward

Symbol	Name	Function Class
Rr582971	regulatory region 582971	1972 bp distal
Rr582972	regulatory region 582972	1941 bp distal
Rr582973	regulatory region 582973	399 bp proximal