rs30848752 SNP Detail

Summary

• ID
  rs30848752
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:42109855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGC AGGCTGCTCC CTGCCCATTC
  M
  AACCCAGGAG CCAGCTTGCT ATGGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44970220	mCV24954835	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	C	A
ss146410838	ENSMUSSNP4620363	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A		A
ss325811617	CHEV_19_42195906	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30848752					SNP	A	C	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:42109855 () rs orientation: forward

Symbol	Name	Function Class
Avpi1	arginine vasopressin-induced 1	1859 bp downstream
Pi4k2a	phosphatidylinositol 4-kinase type 2 alpha	within coordinates
Rr547821	regulatory region 547821	633 bp distal
Rr547822	regulatory region 547822	1110 bp proximal
Tssr156483	transcription start site region 156483	1149 bp downstream