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rs30848846 SNP Detail
Summary
  • ID
    rs30848846
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr3:65545360 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCCCTGCATA ACTAGAGTGG
    ACAACTGGTG GAGGTAATAA AAACCTATAT TTCATTTATT CTCTTGATCA AATGAAGCTC
    TATTTAGCTG ATATCTGTCC AGAGTCAGAT TTTCCACAGC ATGAAAGCTC TGTTTCAGGA
    CTTTAGCTCT GTTTTGGTGC CTGTCTTCCT TTATAGAAGC TAATAAGCAG CTGACATAAA
    W
    TTTTTATTGG GTGGTATTTG GTTTTTACTG CAAGTTTATG GATATTACTA GATTTAATAT
    TCAATAAACA AATTTTAATC ACTTGCTTTA TGCACAGCGA AAGGAAAATA CCAGATGATG
    TTTTTTGAAA ACTTACAGTC CAAATAGAAA GATTAAATAA TGTGTTTATT GAGAACTTTA
    TGAATAAAGT TGGAAGTACA                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
ss45471270 mCV22851893 ABI CRAMUS_MOUSE f SNP T A A A
ss135252859 ENSMUSSNP154368 ENSEMBL ENSEMBL_Sanger f SNP T A A
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
rs30848846 SNP T A A A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:65545360 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm65444 predicted gene, 65444 664 bp downstream
Rr577715 regulatory region 577715 1708 bp distal
Rr577716 regulatory region 577716 238 bp distal
Rr577717 regulatory region 577717 979 bp proximal
Rr577718 regulatory region 577718 1377 bp proximal
Tssr33467 transcription start site region 33467 1339 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory