rs30848978 SNP Detail

Summary

• ID
  rs30848978
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17693934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCC GCGAGCTGTT ACGTCAGTGG
  K
  TCCCTCGGCG GCGCCCGGGC TGTCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45970300	mCV23969318	ABI	CRAMUS_MOUSE	f	SNP	T	G	T
ss321756056	CHEV_6_17643935	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30848978					SNP	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17693934 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	within coordinates
Gm55211	predicted gene, 55211	378 bp downstream
Gm55212	predicted gene, 55212	2 bp upstream
Gm55213	predicted gene, 55213	967 bp upstream
Gm55215	predicted gene, 55215	1419 bp upstream
Rr626833	regulatory region 626833	991 bp distal
Rr626834	regulatory region 626834	within coordinates
Rr626835	regulatory region 626835	609 bp proximal
Rr626836	regulatory region 626836	780 bp proximal
St7	suppression of tumorigenicity 7	within coordinates
Tssr55085	transcription start site region 55085	317 bp downstream
Tssr55086	transcription start site region 55086	within coordinates
Tssr55087	transcription start site region 55087	30 bp upstream
Tssr55088	transcription start site region 55088	70 bp upstream
Tssr55089	transcription start site region 55089	116 bp upstream
Tssr55090	transcription start site region 55090	235 bp upstream
Tssr59909	transcription start site region 59909	760 bp downstream