rs30849509 SNP Detail

Summary

• ID
  rs30849509
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:25278425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACAGCTCAA TCTAGAGGTA GTTTAAACTG GCTTTGATTT
  CCATTTTAGG GAGGAAGAAA AAGGTTCAAA GTTAAGTTAG TTGAGTATAG CGAGCATGCC
  Y
  ATAATCCCAG CACTGAGCTA GAAGCGGGGA GACCGGTATT GAATCAGGGT CATCCTGGGC
  TGCAGAGCCT GCGCAGCCTG AGACCCTGTC TCAAACAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss44970484	mCV25424487	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss146282470	ENSMUSSNP6201366	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss325779932	CHEV_19_25375551	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs30849509					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:25278425 () rs orientation: forward

Symbol	Name	Function Class
Kank1	KN motif and ankyrin repeat domains 1	within coordinates
Rr364353	regulatory region 364353	within coordinates
Tssr155675	transcription start site region 155675	479 bp downstream
Tssr155676	transcription start site region 155676	469 bp downstream