rs30849907 SNP Detail

Summary

• ID
  rs30849907
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75367369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATA TCACTGAGCC AAATCCCCCT
  R
  CTTTCCAATT TGCTTAAAAT TAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39228295	mCV24265483	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss139749544	ENSMUSSNP5999902	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
ss324673213	CHEV_14_75529736	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30849907					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75367369 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6736	CpG island 6736	592 bp proximal
Cpgi6737	CpG island 6737	1165 bp proximal
Gm62951	predicted gene, 62951	441 bp downstream
Lcp1	lymphocyte cytosolic protein 1	1201 bp upstream
Lrrc63	leucine rich repeat containing 63	within coordinates
Rr297500	regulatory region 297500	31 bp proximal
Tssr4477	transcription start site region 4477	698 bp downstream
Tssr126606	transcription start site region 126606	1178 bp upstream
Tssr126607	transcription start site region 126607	1297 bp upstream
Tssr126608	transcription start site region 126608	1344 bp upstream
Tssr126609	transcription start site region 126609	1603 bp upstream
Tssr126610	transcription start site region 126610	1655 bp upstream
Tssr129761	transcription start site region 129761	657 bp downstream
Tssr129762	transcription start site region 129762	679 bp downstream
Tssr129763	transcription start site region 129763	715 bp downstream
Tssr129764	transcription start site region 129764	979 bp downstream
Tssr129765	transcription start site region 129765	1076 bp downstream
Tssr129766	transcription start site region 129766	1646 bp downstream
Tssr129767	transcription start site region 129767	1688 bp downstream