rs30850490 SNP Detail

Summary

• ID
  rs30850490
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161114546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAC CATAAGATTC GCGATCGTTA
  W
  GTCTTTGCTC TCAAGGTATC TTTTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss44969655	mCV23048349	ABI	CRAMUS_MOUSE	f	SNP	A	A	A			A		T
ss49523977	NES12844714	PERLEGEN	MM_PANEL2	f	SNP			A	A	A		T		A	A	T	A
ss145911142	ENSMUSSNP5261720	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30850490					SNP	A	A	A	A	A	A	T	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49523977	NES12844714	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161114546 () rs orientation: forward

Symbol	Name	Function Class
Rr421789	regulatory region 421789	within coordinates
Rr421790	regulatory region 421790	71 bp distal