rs30850694 SNP Detail

Summary

• ID
  rs30850694
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:59678636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGT TTGGGAGGCA GGCGTGGTGG
  Y
  GGTGGCGGTG GCGGTGGCCC CGGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39228302	mCV23574819	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss139597934	ENSMUSSNP868506	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30850694					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:59678636 () rs orientation: forward

Symbol	Name	Function Class
Cab39l	calcium binding protein 39-like	within coordinates
Cpgi6560	CpG island 6560	within coordinates
Gm45935	predicted gene, 45935	307 bp upstream
Rr404137	regulatory region 404137	129 bp downstream
Rr493049	regulatory region 493049	323 bp distal
Rr493050	regulatory region 493050	196 bp distal
Rr493051	regulatory region 493051	within coordinates
Setdb2	SET domain, bifurcated 2	307 bp upstream
Tssr125903	transcription start site region 125903	605 bp downstream
Tssr125904	transcription start site region 125904	191 bp downstream
Tssr129008	transcription start site region 129008	300 bp upstream
Tssr129009	transcription start site region 129009	90 bp upstream
Tssr129010	transcription start site region 129010	79 bp upstream
Tssr129011	transcription start site region 129011	115 bp downstream
Tssr129012	transcription start site region 129012	122 bp downstream
Tssr129013	transcription start site region 129013	124 bp downstream