rs30852065 SNP Detail

Summary

• ID
  rs30852065
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108636381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCGC GGAGAGGCTT GCAAGTGAGC
  S
  GAGCTCCGGC CCGCGTCCGG GCCAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	LG/J	SM/J
ss45971986	mCV23142685	ABI	CRAMUS_MOUSE	f	SNP	G	C
ss321893491	CHEV_6_108609414	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	LG/J	SM/J
rs30852065					SNP	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss133506676	ENSMUSSNP4820919	ENSEMBL	ENSEMBL_Sanger	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108636381 () rs orientation: forward

Symbol	Name	Function Class
0610040F04Rik	RIKEN cDNA 0610040F04 gene	within coordinates
4833447P13Rik	RIKEN cDNA 4833447P13 gene	within coordinates
Bhlhe40	basic helix-loop-helix family, member e40	1209 bp upstream
Cpgi17812	CpG island 17812	within coordinates
Gm17055	predicted gene 17055	within coordinates
Rr636153	regulatory region 636153	910 bp distal
Rr636154	regulatory region 636154	409 bp distal
Rr636155	regulatory region 636155	17 bp proximal
Rr636156	regulatory region 636156	719 bp proximal
Rr636157	regulatory region 636157	1304 bp proximal
Rr636158	regulatory region 636158	1489 bp proximal
Tssr58067	transcription start site region 58067	799 bp downstream
Tssr58068	transcription start site region 58068	750 bp downstream
Tssr58069	transcription start site region 58069	650 bp downstream
Tssr58070	transcription start site region 58070	607 bp downstream
Tssr58071	transcription start site region 58071	244 bp upstream
Tssr58072	transcription start site region 58072	1014 bp upstream
Tssr58073	transcription start site region 58073	1060 bp upstream
Tssr58074	transcription start site region 58074	1099 bp upstream
Tssr58075	transcription start site region 58075	1196 bp upstream
Tssr58076	transcription start site region 58076	1352 bp upstream
Tssr58077	transcription start site region 58077	1435 bp upstream
Tssr62390	transcription start site region 62390	within coordinates
Tssr62391	transcription start site region 62391	382 bp downstream