rs30852660 SNP Detail

Summary

• ID
  rs30852660
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154931412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCCATGTG CTGTCCAGAC ATAAGTGCAG GCAAAACATC
  CATGCATATA AAATAAAGTC ATTTTTAAAA ATTAATAAAA TATAAAATCT CAAAGGTGGG
  Y
  ACCTTCTGAT ATTGGCCTAG AGGTGGGGAA ACAACCTGAA AAAAAAAAGA TTTGAGCAGG
  GTTCCAGGCT TCTAAATGTT CAGAAAATGT TGACTACCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss44971296	mCV23095475	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss145774428	ENSMUSSNP1951575	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30852660					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154931412 () rs orientation: forward

Symbol	Name	Function Class
Gm29282	predicted gene 29282	within coordinates
Gm41980	predicted gene, 41980	within coordinates
Gm51651	predicted gene, 51651	858 bp upstream
Gm71001	predicted gene, 71001	7 bp downstream
Rr372279	regulatory region 372279	within coordinates
Tssr247	transcription start site region 247	886 bp upstream
Tssr9520	transcription start site region 9520	651 bp downstream
Tssr14327	transcription start site region 14327	905 bp upstream
Tssr14328	transcription start site region 14328	855 bp upstream
Tssr14329	transcription start site region 14329	802 bp upstream
Tssr14330	transcription start site region 14330	481 bp upstream