rs30852847 SNP Detail

Summary

• ID
  rs30852847
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:60701100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTGT TAGGCTGTAA TGGGGACAGG
  M
  ACAGTGCGAG TCTCTCTGTG CCCTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46451088	mCV23023733	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	A
ss132265192	ENSMUSSNP363948	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30852847					SNP	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:60701100 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2996	CpG island 2996	616 bp proximal
Gm74448	predicted gene, 74448	919 bp upstream
Rr402613	regulatory region 402613	891 bp upstream
Shmt1	serine hydroxymethyltransferase 1 (soluble)	within coordinates
Tssr108307	transcription start site region 108307	1444 bp upstream
Tssr108308	transcription start site region 108308	1399 bp upstream
Tssr108309	transcription start site region 108309	750 bp downstream
Tssr108310	transcription start site region 108310	831 bp downstream
Tssr108311	transcription start site region 108311	954 bp downstream
Tssr108312	transcription start site region 108312	981 bp downstream