rs30852899 SNP Detail

Summary

• ID
  rs30852899
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:104966575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTTTCTG CACTTCCGCA
  CTCGGTGCTC AGCACTGAGA ACTAAAGGCT TTCCTAGTTA TGGGTCAAAG AAAATCTCAG
  CAAAGTCAGA AGCTGGATGA CTGCGGAAAC AGGCGACTTT CTGCATCACG GAGCCAGCGT
  GGTGAGCCAG TAACTGTCAC ACAAGCAGCA GTCTTGTGTT TCCAACCAGC AGAAAGGAGT
  R
  GAAATATATC TGATGATGGT GGTGATGACG ATGATGATGA AGAGATGGTA AGGATAACAC
  TTGTTATGCG ACCTTCTGAG ACTGTACTTC TGGTCTGTGA AGTGTCTCCT TTAGTCTCAG
  ACATCTAAAA CTACCCTTGT CTTACTTGAT ATCAAGCCTT GAGTTCTCTC TGGCTTCTAG
  AAAGTATGAA GGGCAATGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47490929	NES11210765	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30852899					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47490929	NES11210765	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:104966575 () rs orientation: forward

Symbol	Name	Function Class
Rr187257	regulatory region 187257	within coordinates
Tk2	thymidine kinase 2, mitochondrial	within coordinates
Tssr79036	transcription start site region 79036	164 bp downstream
Tssr82594	transcription start site region 82594	315 bp upstream