rs30853300 SNP Detail

Summary

• ID
  rs30853300
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48724092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGCC ACTGGAGACT TGTGGAGATC
  R
  GAGGACAGCT TTCTGAAGTC ATTTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45971332	mCV25192947	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss321794606	CHEV_6_48697157	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs30853300					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48724092 () rs orientation: forward

Symbol	Name	Function Class
Gimap5	GTPase, IMAP family member 5	within coordinates
Gm28053	predicted gene, 28053	within coordinates
Rr135565	regulatory region 135565	292 bp distal
Rr146257	regulatory region 146257	within coordinates
Rr368069	regulatory region 368069	999 bp downstream
Rr399641	regulatory region 399641	363 bp downstream
Rr399642	regulatory region 399642	491 bp upstream
Tssr1832	transcription start site region 1832	505 bp downstream
Tssr56207	transcription start site region 56207	978 bp downstream
Tssr56208	transcription start site region 56208	946 bp downstream
Tssr56209	transcription start site region 56209	924 bp downstream
Tssr56210	transcription start site region 56210	856 bp downstream
Tssr56211	transcription start site region 56211	440 bp downstream
Tssr56212	transcription start site region 56212	766 bp upstream
Tssr60779	transcription start site region 60779	1054 bp upstream
Tssr60780	transcription start site region 60780	343 bp downstream
Tssr60781	transcription start site region 60781	377 bp downstream
Tssr60782	transcription start site region 60782	583 bp downstream