rs30853312 SNP Detail

Summary

• ID
  rs30853312
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3050468 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  ATTTTTCAAG TCTTCAAGTG GATGTTTCTC ATTTTCCATG ATTTTCAGTT TTCTTGCCAT
  ATTCCAAGTC CTACAGTGGA CATTTCTAAA TTTTCCACCT TTTTCAGTTT TCCTCGACGT
  ATTTCACGTA CTAAAGTGTG TATTTCTCAT TTTCCATGAT TTTCAGTTTT CTTGCCATAT
  TCCACGTCCT ACAGTGGACA TTTCTAAATT TTCCAACTTT TTCAGTTTTC CTCGCCATAT
  TTCACGTCCT AAAGTGTGTA TTTCTCATTT TCTGTGATTT TCAGTTTTCT CGCCATATTC
  Y
  AGGTCCTTCA GTGTGCATTT CTCATTTTTC ATGTTTTTTT AGTGATTTCG TCATTTTTCA
  ATTCTTCAAG TGGATGTTTC TCATTTTCCA TGATTTTCAG TTTTCTTGCC ATATTTCACG
  TCCTACAGTG GACATTTCTA AATATTCCTC CTTTTTCAGT TTTCCTCGCC ATATTTCACG
  TCCTAAAGTG TGTATTTCAC ATTTTCCGTG ATTTTCAGAT TTCTCGCCAT ATTCCAGGTC
  CTTCAGTGTG CATTTCTCAT TTTTCACGTT TTTCAGTGAT TTCGTCCTTT TTTCAAGTCG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss46451027	mCV25360294	ABI	CRAMUS_MOUSE	f	SNP	C		T
ss46467339	mCV22833194	ABI	CRAMUS_MOUSE	r	SNP			A	G
ss46470563	mCV22880172	ABI	CRAMUS_MOUSE	r	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30853312					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3050468 () rs orientation: reverse

Symbol	Name	Function Class
Tssr4284	transcription start site region 4284	1858 bp downstream
Tssr4285	transcription start site region 4285	1833 bp upstream
Tssr4286	transcription start site region 4286	1729 bp downstream
Tssr4287	transcription start site region 4287	1694 bp upstream
Tssr4288	transcription start site region 4288	1666 bp downstream
Tssr4289	transcription start site region 4289	1571 bp upstream
Tssr4290	transcription start site region 4290	1564 bp downstream
Tssr4291	transcription start site region 4291	1484 bp upstream
Tssr4292	transcription start site region 4292	1448 bp downstream
Tssr4293	transcription start site region 4293	1413 bp upstream
Tssr4294	transcription start site region 4294	1411 bp downstream
Tssr4295	transcription start site region 4295	1338 bp upstream
Tssr4296	transcription start site region 4296	1375 bp downstream
Tssr4297	transcription start site region 4297	1311 bp upstream
Tssr4298	transcription start site region 4298	1293 bp downstream
Tssr4299	transcription start site region 4299	1253 bp downstream
Tssr4300	transcription start site region 4300	1215 bp downstream
Tssr4301	transcription start site region 4301	1197 bp upstream
Tssr4302	transcription start site region 4302	1185 bp upstream
Tssr4303	transcription start site region 4303	1130 bp downstream
Tssr4304	transcription start site region 4304	1101 bp upstream
Tssr4305	transcription start site region 4305	1032 bp downstream
Tssr4306	transcription start site region 4306	1013 bp upstream
Tssr4307	transcription start site region 4307	992 bp downstream
Tssr4308	transcription start site region 4308	960 bp upstream
Tssr4309	transcription start site region 4309	916 bp upstream
Tssr4310	transcription start site region 4310	869 bp downstream
Tssr4311	transcription start site region 4311	841 bp upstream
Tssr4312	transcription start site region 4312	761 bp downstream
Tssr4313	transcription start site region 4313	702 bp upstream
Tssr4314	transcription start site region 4314	690 bp downstream
Tssr4315	transcription start site region 4315	666 bp downstream
Tssr4316	transcription start site region 4316	639 bp upstream
Tssr4317	transcription start site region 4317	563 bp downstream
Tssr4318	transcription start site region 4318	539 bp upstream
Tssr4319	transcription start site region 4319	482 bp upstream
Tssr4320	transcription start site region 4320	418 bp downstream
Tssr4321	transcription start site region 4321	390 bp upstream
Tssr4322	transcription start site region 4322	291 bp downstream
Tssr4323	transcription start site region 4323	256 bp upstream
Tssr4324	transcription start site region 4324	226 bp downstream
Tssr4325	transcription start site region 4325	175 bp downstream
Tssr4326	transcription start site region 4326	137 bp upstream
Tssr4327	transcription start site region 4327	134 bp downstream
Tssr4328	transcription start site region 4328	52 bp downstream
Tssr4329	transcription start site region 4329	54 bp upstream
Tssr4330	transcription start site region 4330	49 bp upstream
Tssr4331	transcription start site region 4331	73 bp downstream
Tssr4332	transcription start site region 4332	179 bp downstream
Tssr4333	transcription start site region 4333	191 bp upstream
Tssr4334	transcription start site region 4334	213 bp downstream
Tssr4335	transcription start site region 4335	360 bp downstream
Tssr4336	transcription start site region 4336	364 bp upstream
Tssr4337	transcription start site region 4337	437 bp downstream