rs30853842 SNP Detail

Summary

• ID
  rs30853842
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:104967623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTCCAGG GTAAACCACA
  GGGATCCATT CCTCGGTAAT GTAAAGCCCA AACCCAAGTC AGAGGCTCAT CGAGAAACCT
  GGTGACCTGG AACAAGTGCC AAGGAAAGCT AAGCCACTTG GAACCTTGGA GACACCTCAC
  GGGAGGTTCC TGGGCTTCGT GCAAACCCAC CCAGGCCTCA GAAATCCCTG GCTCGCCATT
  S
  CCCTTTCCTC TGAATGAGCT AGAACAATGG GGACAGACTG GCTGTGCTGG GCACAGGCCT
  CAGAACCAGC ACTCCTAGGC ACTCACAGGG AAGCTGGCAT TTGTGCAAGA GACAAACTAC
  TCACCAGAGG GTTATGGCCA TGGACATTTC TCCACTTGAG CACAGGCTCC ATTAACACCT
  GGAAGGAGAG CAAACGTGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47490944	NES11210709	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30853842					SNP	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47490944	NES11210709	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:104967623 () rs orientation: forward

Symbol	Name	Function Class
Rr187257	regulatory region 187257	within coordinates
Tk2	thymidine kinase 2, mitochondrial	within coordinates
Tssr79036	transcription start site region 79036	1212 bp downstream
Tssr82594	transcription start site region 82594	1363 bp upstream