rs30854269 SNP Detail

Summary

• ID
  rs30854269
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164287948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGAAAAAG GAAAGGAAAG AAAAGAAAAG AAAAGAAAAG
  AAAAGAAAAG TGCTGCCCCT TAGCTGTCGA CTTGTATGAT AAATGCCAGT TATACTGGGA
  R
  TGGGGAGTGG GAGACAAGCT TGCTTGACTT TCTTGCCCTT GCCCGGTCTT CCTTGGGTAG
  ATTTCTCCCC TTCTCAGGTG AGTTCCTCAG CTCTGCGCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44971894	mCV25296156	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	A
ss145978968	ENSMUSSNP687153	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30854269					SNP	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164287948 () rs orientation: forward

Symbol	Name	Function Class
Cpgi945	CpG island 945	1303 bp distal
Gm32391	predicted gene, 32391	within coordinates
Gm70485	predicted gene, 70485	within coordinates
Gm70492	predicted gene, 70492	1633 bp upstream
Rr422215	regulatory region 422215	1864 bp distal
Rr422216	regulatory region 422216	1955 bp distal
Rr422217	regulatory region 422217	1644 bp distal
Rr422218	regulatory region 422218	1143 bp distal
Rr422219	regulatory region 422219	40 bp proximal
Rr422220	regulatory region 422220	1506 bp proximal
Rr422221	regulatory region 422221	1660 bp proximal
Tssr9788	transcription start site region 9788	1849 bp downstream
Tssr9789	transcription start site region 9789	1832 bp downstream
Tssr14748	transcription start site region 14748	1642 bp upstream
Tssr14749	transcription start site region 14749	460 bp downstream
Tssr14750	transcription start site region 14750	475 bp downstream