rs30854407 SNP Detail

Summary

• ID
  rs30854407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87754597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAG AGATTTTTAG GAGCCTGGAA
  Y
  GGGAGGGTGA AAGACAGAGG AGTCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45473299	mCV23485234	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	T
ss135468480	ENSMUSSNP1121326	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30854407					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87754597 () rs orientation: forward

Symbol	Name	Function Class
Rr367451	regulatory region 367451	140 bp downstream
Rr579559	regulatory region 579559	275 bp distal
Sh2d2a	SH2 domain containing 2A	within coordinates
Tssr29832	transcription start site region 29832	1991 bp downstream
Tssr29833	transcription start site region 29833	518 bp downstream
Tssr29834	transcription start site region 29834	502 bp downstream
Tssr29835	transcription start site region 29835	436 bp downstream
Tssr29836	transcription start site region 29836	397 bp downstream
Tssr29837	transcription start site region 29837	291 bp downstream
Tssr29838	transcription start site region 29838	223 bp downstream
Tssr29839	transcription start site region 29839	143 bp downstream
Tssr33958	transcription start site region 33958	689 bp upstream
Tssr33959	transcription start site region 33959	489 bp upstream
Tssr33960	transcription start site region 33960	385 bp upstream
Tssr33961	transcription start site region 33961	1815 bp downstream