rs30854544 SNP Detail

Summary

• ID
  rs30854544
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17846574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTC ATTTCTACCT TATGTCACTA
  S
  TAAATTACAG TTTTAAATAC ATTCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45474385	mCV22663406	ABI	CRAMUS_MOUSE	f	SNP		C	G				G		G
ss46817751	NES10864819	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	C	G		G	G	G	G	G	G	G	G
ss134653788	ENSMUSSNP6124174	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30854544					SNP	C	C	G	G	C	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817751	NES10864819	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17846574 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12995	CpG island 12995	1729 bp distal
Cpgi12996	CpG island 12996	1427 bp proximal
Gm66000	predicted gene, 66000	within coordinates
Mir124-2hg	Mir124-2 host gene (non-protein coding)	within coordinates
Rr573848	regulatory region 573848	1643 bp distal
Rr573849	regulatory region 573849	116 bp distal
Rr573850	regulatory region 573850	210 bp proximal
Rr573851	regulatory region 573851	820 bp proximal
Tssr28485	transcription start site region 28485	1498 bp upstream
Tssr28486	transcription start site region 28486	1579 bp upstream
Tssr28487	transcription start site region 28487	1605 bp upstream
Tssr28488	transcription start site region 28488	1886 bp upstream