rs30854561 SNP Detail

Summary

• ID
  rs30854561
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136150087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gatggaggc acacgccttt aatctcagca
  ctctataggc agaggcagac ggatctctga gttcaaggcc agcctggtct acagagaaag
  ttccaagaca gcttgggtta cacagagaaa ccctgtcttg ggtggaaaaa aatagaaGGG
  W
  TGaggagtgg gcaaactttg gcccacagac caagtccagt tcacctaacc agagctgacc
  aataaagttg gattgagaca taagtacaga ttcgcgatgt caggctgcgt cagctctaac
  acggtaggtt ggttgtgata tgagaccgta                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44970749	mCV24740038	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	T
ss145554268	ENSMUSSNP4764289	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		T
ss319995088	CHEV_1_138118926	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30854561					SNP	A	T	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136150087 () rs orientation: forward

Symbol	Name	Function Class
Gm26568	predicted gene, 26568	within coordinates
Inava	innate immunity activator	within coordinates
Tssr229	transcription start site region 229	1957 bp upstream
Tssr9051	transcription start site region 9051	1615 bp downstream